Just because you don't have concerns doesn't mean your motor isn't at risk.
What sort of AFRs are you seeing? What's your injector duty cycle look like? EGTs? How does ambient temps/humidity affect these parameters? What about altitude? etc, etc, etc.
There are a ton of things you need to validate over a lot more than 12k miles to be sure a tune is safe. This is in fact the biggest reason places like Cobb take *forever* to release their staged kits upon the masses... because they want to be reasonably sure that no one's going to blow up their motor running their stuff. Anyone that's not going through those steps needs to qualify their claims about cranking up the boost with a "your mileage may vary" and "try it at your own risk".
IMO, just turning up the boost is *never* a good idea. Step one is getting all the proper gauges (boost, EGT, wideband O2 at a minimum) so you can analyze the health of the motor. Step two is making sure you've done everything to support that extra boost: usually that means making sure you won't run out of fuel, which means larger injectors and a bigger fuel pump (unless the MS3 injectors are only running a 50-60% duty cycle at the factory boost levels, and even then you may still need a fuel pump). Then you need the ability to remap the spark/fuel tables to properly match the additional boost, so you're looking at an AP or similar engine management. Now you can turn up the boost.
At least if you want to do it properly. Or you can go the DSM route and hit your wastegate with a hammer and run 13s until crankwalk parks your Eclipse in the junk yard.
Captain i'm doing this STOCK. K&N drop in and NGK plugs. Thats it, no boost controller or anything.