The cheap no-parts solution is to remove the bolt, paint the now-unused mounting point, and rely on the fact that by the time rubbing or vibration has caused enough damage to be actionable, the car will be long out of warranty.
What "fact"? Have you even seen evidence there is "rubbing or vibration" with the bolt removed? Because I haven't. and I'm not saying the fix won't rub or vibrate. I haven't tested it. Have you? On how many vehicles?
I see a lot of unfounded assumptions here that may or may not be an actual problem, now or down the road. Personally, without evidence to the contrary, I'd say it looks like a classic case of making mountains out of molehills. I certainly wouldn't lose any sleep over it but the worse thing you could do is take matters into your own hands without knowing more than we do (regardless of the amount of common sense you think you have).