I know this is a very old post but just to let you know that the FSDE that's in the '00 and newer 626 is the same exact motor found in the 626. The only differences are that some of it's parts were built here in the states (the igition coil pack can be found on the average Ford vehicle and the stock ECU is programed to be electronicly limited to 113 mph) which means that it puts out the same 130 hp/135 ft lbs tq as the Protege. And BTW, From what I know from the dealer, Mazda didn't do anything to the MSP motor but add the thicker head gasket to lower the compression. Other than that, same stock parts, which is why it has low boost from the factory. I wish we had gotten the diesel version of the 2.0L that's offered everywhere else but here so the cranks could be swapped out to hold even more power. But as of what I know of so far, the crank can take some punishment. I say this because there's a BP powered turbo Miata running around in Cali with over 700 hp that's still running the stock crank and I believe he runs 8's (maybe 9's). And just to let you know that the earlier FS series motors have the same duration profile cams as the newer ones (excluding the '00 and newer DE and of course the ZE) which was always 198 intake/ 200 exhaust while the ZE was 210 intake/ 200 exhaust, but with more lift. The trick to getting the older FS to make more power is to get rid of the hydraulic lifters and swap them for the solids, which from what I hear is worth a few hp on the top end. Also, it's cheaper to go with the DE's solid lifters. I believe I was quoted $50 per hydraulic lifter as aposed to either $11 or $17, both from the dealer and either way it's worth it. And as far as FI goes, the best bet is probly to grab a manifold from a '98 and newer 626 and port & polish the hell out of it because the emissions friendly VICS (variable inertia control system) would more than likely block air flow during spool up over a non VICS system. Sorry for the late info but that's my 2 cents.
EDIT, BTW, the heads are the same througout the years. The only difference between the Older distributor'd FS and the coil packed FS is the fact that the DE has a cap in place of that old distributor hole meaning that the ZE cams can be swapped into the olders (minus the exhaust, but it can be taken to the machine shop and have them regrind it to the same lift, but add 210 duration to that and it will pull better with proper tuning)