Had a minor setback today. I couldn't get the car to idle no matter what adjustments I made on the throttle body or in the Megasquirt. I finally started looking at the realtime display in Megatune and noticed that battery voltage didn't look right. Having to start the car over and over again means that I've basically got a huge truck battery hooked up to a gigantic jumpbox. The battery wasn't in good shape to begin with, but it is basically just serving as a buffer and the jumpbox supplies the starting power. I was looking at my voltage and noticed that, even if I could keep the car running with some throttle input, the battery voltage never showed more than 10.5- 11 volts. Even at idle the alternator should be putting out at least 12 volts. I suspected that my Suzuki alternator wasn't working and the low voltage could be causing problems. I had the alternator tested before I installed it so I started to trace the wiring. The alternator only has 3 wires on it...the main charge wire, an output wire for the dash warning light, and a 12V supply wire to trigger the alternator's coil. I traced the 12V supply wire and found out that it just dead ended in the fuse box. It had no supply at all. I looked in the wiring diagrams and found out that it is supposed to jumper off the injector main fuse. I looked at the old wiring harness that I took out of the car because it was pretty hacked up and it had the 12V supply wired correctly. I bought the wiring harness that is in the car now used from someone and I'm wondering what car it actually came from. If the alternator circut isn't wired per the manual we based the MS wiring off of then what else isn't wired correctly. I'm going to fix the alternator issue, but if that doesn't solve the problem I may have to go on another hunt for a decent wiring harness that I know came out of the correct model Protege.