If you know that you're going to get an upgraded IC, whether it be FMIC or TMIC you should wait for the protune because you'll just be wasting it. Getting a protune and then adding a significant mod like an intercooler upgrade will likely throw off your tune, then you'll have to get it retuned. Get all of your mods done first, as long as your car is running safely with the cobb ots maps you should be fine. Getting a protune should be your last goal with this car performance wise, unless you have the money to keep getting retuned, or are handy with cobbs ATR. I myself am waiting on getting it protuned because I'm still not sure whether or not I want to get an aftermarket Down-pipe. But regardless of whether I do or don't, when I get protuned it will be my last step.