I consider them a bandaid because even if you have the exact parts for the specific map (which rarely is the case) you still aren't tuned for your specific car...which a pro-tune will be. the OTS is a great starting point in most cases, but the last level of refinement/advancement...well...tuning comes from a protune (or any other tuning solution mentioned above); which is why I consider it to be more of a bandaid. They are good for jumps between performance levels and steering you in the right direction, but not so much for getting dialed in.
I don't think they are bad; but there is just no way for you [Cobb]to factor in all the variables.
To go further, but a little more off topic: waiting for an OTS map to match your specific mod list is crazy (edit: I don't know anyone who actually does this). I can't imagine, just on the bolt-on hard parts side of things, all of the R&D (time/money) required for OTS maps for just a different intake, all other things being equal. while a great service to go along with our $600 AP, OTS maps just don't seem feasible for you or me. I remember you told someone to not hold their breath for a stage 1 TMIC map (I'm paraphrasing) because the time invested just wasn't worth the results, yet there are plenty of people buying up top mounts that have not, nor are they likely to, upgrade their DP/mid pipe. What are these people to do? bandaid it with a stage one or a stage two OTS for the interim and get it tuned later to take advantage of the modest gains from their intercooler upgrade.
Obviously this is just my opinion here (on an internet forum, no less) and at the end of the day you guys will have forgotten more than I'll ever know about cars...which is why I trust and purchase your parts lol.