My only guess is, is that either the dealer or the nice folks in Hiroshima got overzealous with installing the retaining hooks for the floormats.
So this morning, I went back the dealer to have the TSB for ECU reflash done and while I was waiting, I checked out other CX-7's on the lot. Some had the hooks installed like mine, others simply had the cut out in the carpet for the hooks, but none were installed. I found it odd that they would provide the hooks to be installed and yet the floormats did not have the grommet holes to support this. Perhaps for Japan and Europe it is the exact opposite?
Anyways, I either had the choice to simply remove the hooks and be done with or make life more complicated and do a DIY project for this. Since the hooks were already there, I decided to put some grommets in my passenger-side floormat.