Update: The new radio HU is in, they're just waiting on the radio surround piece. I had to b**** to the regional director about it even while he was sitting in my driver's seat staring at it before they'd order the new one.
Hesitation is still existant, but not to such an extent thanks to JoePMBC's FPR kit.
I've also disconnected the stock sub in favor of two JL 10W0's. I've turned the amp gain back up a bit and have not changed any fuses since.
Battery died yet again.
Passenger seat bolt was loose and began causing a rattle. I've tightened it down myself, but now I wonder about the safety of having seats which aren't secured very well.
Broken I/C pipe is still there, the dealership ordered a MAF pipe, not the BPV to I/C pipe. I've epoxied it and taped it up in the mean time.
What else... I have two dings in my doors, but they do not look in any way caused by a door. I'm wondering if it happened while at the dealership, as I was talking to a couple tonight who went to the same dealership and found scratches/dings on their car after picking it up from service.
Radio antenna black cover is still hanging there, not connected to the glass as it was. They "fixed" it, only to have it fall back off again.
Driver's side stock foglight bulb went out; replaced with aftermarket H3 bulb.
There's now tape goo all over the plastic black engine cover/airbox from me taping the I/C piping all up.
I think that's it for now. I'll be sure to get the real list when I go back to the dealer and I'll post any new problems.