It wasn't clear in the article whether the SEMA car got upgraded engine internals. The 2.5's 9.7:1 compression ratio is close enough the the MS3's 9.5:1, but the MS3 has a forged crank, forged rods and forged pistons. Seems like these are necessities when pumping 15 psi, but it's unclear whether or not the 2.5 uses them. Having to replace the engine internals seems like a deal killer. I agree that it would probably be easier to find a MS3 drive train and swap it in. The article also speculates that "If, on the other hand, you call up Tri-Point and have them work up a Garrett turbo kit and Mazdaspeed suspension/brake package with appropriate wheels, you might get out of there for about $5,000". I wonder how accurate that price is and what it would include. Perhaps you should give them a call and let us know what they say 
