That's not wiring, that's acoustics.
I know exactly what you're describing. I had a similar problem when I was younger. You go from a solid "thump thump" to a constant bass drone with more muddled thumps inside it. Imagine a lake. when you throw a rock into the middle of a calm lake, you can watch each ripple roll out. Try picking out one wave after a day of powerboating, jet skiing, and waves bouncing off the shore back out into the lake. It's just a rolling mass, impossible to distinguish. Your car cab is doing the same thing as the lake shore.
Do your seats fold down? if so, fold one down, the drone should disappear. If they dont, do a test with the trunk cracked. Permanent fix? Drop from 4 8's to 2 10's or a 12. Or just go for less damn power, you crazy guy!!!!!!
You're already creating four separate waves with the four speakers, plus the bouncing. Dynamat insulates both ways. Not only does it keep engine and road noise out, but keeps sound in, meaning even more of it bounces back.
Also, the more sound retained, the more the waves contact each other, creating harmonics for more and more base (root) frequencies. The more harmonics you create (musical notes), the more likely you are to hit a resonant frequency for some material in your car.
One reason why sub boxes are ported is to give the waves an "out" that could affect sound quality.
Seems like there's already some experts here (I aint one), so you're in good hands.