I have a Dashhawk so, I can't speak to how to read it off the AP but, WG duty cycle just measures how much the WG is open during engine operation. If it's opening too much too early, that will bleed off pressure and can cause low boost. Primary cause for high WG duty cycle % are too free flowing exhaust on a too small turbo but, typically you'd be getting high boost spikes or boost creep if this was the issue, not low boost overall.
Make sure you check both hoses from the boost control solenoid for integrity.
You can isolate the wastegate operation another way, too. You could disconnect the boost control solenoid's electrical connection and retest. You should see 15.6 psi or more if you do this, as there's essentially no boost control at that point.
If it manages that, then the WG system may be where the problem lies. If it passes the "suck and hold test" on the hose, it's the boost control solenoid to look at next. Frankly, any issues there, I'd just ditch the whole stupid thing and put in a manual boost controller.
Simple stuff also, have you changed fuel recently and have you datalogged how much knock retard you're seeing? If the car's knocking, it's going to pull timing, close the throttle plate, WHY, to bring the knock under control, and that could gauge as low boost.
How's the car running, is it feeling weak and flat? Or is it running well?