What I forgot to mention is, in light of everything that was going on, I decided to uninstall the springs lol. My intentions with the lowering springs were to eliminate the highway bounce and gain some improvements out of the suspension overall. What ended up happening is, it actually made the bouncing more obvious because you're lower to the ground now, so the bounces are still there, only it's louder and harder.
So, when we diagnosed what the problem was, I ended up re-installing my stock rear springs and had them re-install the stock front springs after they replaced the top strut mounts and bushings.
Riding around stock, it made me realize that the stock suspension is actually set up pretty well and that if I do decide to improve later, it will strictly be dampers.