No, im actually a bme. But know alot of stuff so people are always asking me if Im in totally random fields (electrical, mechanical, physics, etc)
The big thing is modern engines have all sorts of tweaks in them to where the cylinder bore vs stroke is not a big deal. What you need to remember is the more the bore the bigger the recipricating mass so there are trade offs. A square engine is usually a pretty good move.
There was a paper published a while ago where the ideal cylender size was pridicted to be at .4l per cylinder so it could fill the most efficently. The amount of air going in to the engine is more important then bore vs stroke if there in a resonable size.