A question for those with aftermarket in dash connected to bose

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2015 CX-5 Grand Touring AWD w/ Mazda3 18 rims
I have the pioneer with auto eq and time alignment. Should I just leave the centerpoint and adaptive level control on before I remove the factory unit? Rear speakers aren't very loud with centerpoint on but will probably be retuned readjusted by the Pioneer to be louder anyways. My point being if I switch it out turn off centerpoint why even have a center channel? I don't believe the center speaker does anything at all with it switched off.
 
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