Morning...
Best deal I've come across for sound deadening is Raammat. Raamaudio sells it, and Rick is the proprietor, a great guy. You'll want at least one roll of Raammat, and 4-6 yards of Ensolite, a nice closed-cell foam designed to cover over the Raammat and add squeak control to the doors and such. You'll also want two to three cans of adhesive spray. It is the best stuff I've come across for vinyl or carpet work as well.
Wiring wise, Knuknonceptz is very good for raw wire, both power/ground and speaker. The connectors and RCA wires (at least in the mid to lower end) leave something to be desired, but they aren't horrible. My suggestion? Run at least 4 gauge to the trunk, so you only have to do it once even if you upgrade your system. I've had best luck with Streetwires for connectors and fuse blocks. I've also had great luck with Esoteric or Rockford Fosgate RCA's. Most RCA's tend to get destroyed too easily in the auto environment while getting pulled through carpet and such.
This car uses 5x7 speakers stock, and uses poor crossover techniques to deliver the tweeter and woofer an output. To do a car correctly, you'll need to run 2 pairs of wires to the door if you are running a component set, which is highly recommended. I don't recommend investing at all in rear speakers, unless you constantly have friends that are in the back that care about the music. I firmly believe that a powerful and clear front stage can take care of a car's audio needs (accompanying a subwoofer in the trunk.) I'm also a firm believer that less is more, but too little is just like none. Meaning if you are going to do anything to the audio system, you might as well do it properly and thouroughly. A lot of people just a subwoofer and call it quits, but that's typically not going to do much except get the "lows" in the car. Music has a lot more to offer then the bass, of course. Good quality equipment used throughout the system with a proper install and attention to detail will give the best results, naturally.
Honestly I went the aggressive route and decided to go fully active. That means that I don't have a passive crossover on my front speakers, which is what is typically used. A passive crossover is the box that comes with component speakers, and looks like it has coils and resistors in it. Using a setup without them makes for a lot clearer and more impactful sound, but you have to actively cross all the speakers. To do that, I chose the 3sixty.2 and its ability to change crossover levels digitally, as well as its time-alignment and equalizing abilities. This is why it costs $500+! From there, I took Cantons (a german speaker company known for crystal clear detail) and installed them in the doors in the stock locations, using a little "rigging." The sub stage is comprised of a fiberglass tub nestled into the spare tire well, and a single Linear Motor subwoofer made by Eclipse. These subs use a lot of airspace in a sealed box (1.7cubic feet for a 10"), but the results are a very capable 10" sub that behaves like a home theater 15" would, though less loud. This is all amplified with some "old-school" Planet Audio amps that use vacuum tubes (like the ones in guitar amps) in their design. A 4 channel amp powers the two 6.5" woofers and two 1" tweeters in the doors, and a 2channel amp powers the single 10" sub in a bridged-mono configuration. Power? See, watts don't matter unless you are playing VERY high levels of output. People talk watts all day long, but real output of an amp changes constantly according to the music. And volume increases with the square of wattage (power), so it takes only a few watts to get reasonably loud, and hundreds and hundreds of watts to get just a bit louder. What really counts is the amp's ability to play distortion-free at nominal to louder levels, reliably without fail. This is what counts.
You need to budget sound deadening, wiring, connectors, RCA's, either a pair of amps (4ch and sub amp) or a single 5ch amp, some sort of line level converter to turn the stock speaker output into an RCA output (if the amps do not have this feature), and possibly some sort of equalizer to level out the stock head unit's problems. Then you need to pick out a good quality component set, and a subwoofer. With a budget of at least $1000-1200, you can get what you want, which is a stealthy and clean-sounding system. But dear god don't you dare stick a sub under the seat! You might as well just buy better front speakers, it will be the same.