Here are the tools I used for the install. It helps to have two different lengths of driver bits.
Here's the difference in height between the two speakers.
Here you could see the defroster vent pipe. You cannot move it but it's semi-rigid formed plastic.
Here you could see the speaker resting on the vent pipe before I put the screws in.
Here's the speaker after the screws are tightened. Note that I didn't tighten the screws all the way. There's no need. Too much pressure on the screws might damage the vent pipe. The pipe does give a little so it could take some pressure from the speaker. NOTE: for some reason the driver side has greater interference than the passenger side despite both sides appear to be identical to the naked eye.
I purchased this connector on eBay per someone's recommendation on this forum. They are useless. The pin spacing and pin length don't match up to the factory connector. The pins are also significantly thinner than the factory pins.
Here's the factory connector on the stock Bose speaker. De-solder the wire and remove the connector.
Transfer the connector to the Polk speaker and solder the pins. They match up perfectly! Watch for the polarity. The green wire on the factory harness is the negative side.
Another view of the transferred connector on the Polk speaker. Due to the vent pipe you want to orient the connector towards the front. There's plenty of clearance for the connector. That's it! Connect the factory harness and tighten the screws and you are done.